Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926074.1_cds_XP_016474156.1_66210
CDS Infomation

[gene=LOC107795962] [db_xref=GeneID:107795962] [protein=probable polygalacturonase] [protein_id=XP_016474156.1] [location=join(38197..38532,53412..53532,53681..53855,54316..54386,54933..55576)] [gbkey=CDS]
Sequence

ATGAATAAGTGGGTTGGTTCGGTTTTCCTATGCATTGTGAGCATATTGTTTCTGATGAAC
TGGCCGGTGGCGGCGGAGTTGGAGACGTGCTCGGGGATAGTGCCAATGCAATATCGATAT
GATAAGATATCAATATTGGACTATGGAGGTGTAGGCGATGGACGGACATTGAATACAAAA
GCGTTTAAAGAAGCAATTTTTCGAATTCAGCACTTGAAAAGGAGGGGTGGATCGTTGCTT
TACGTACCTGCTGGCGTATATTTGACTGGTCCATTTAATCTTACTAGTCGAATGACTCTT
TATTTGGCCCGTGGTGCTGTTATCAAAGCCACTCAGGATGCCAGTCAATGGCCATTGGTC
GATCCATTGCCTTCATATGGGAGAGGAAGAGAGCGACCTGGTGGAAGGTATATGAGCTTA
CTCCATGGAGACGGGCTCCATGATGTGATTATCACTGGTGAGAATGGTACTATTGATGGC
CAGGGTGATGTTTGGTGGAATATGTGGAGGCAAAGAACTCTTCAATTTACAAGACCTCAT
CTCATTGAACTAATGAACTCCAGAGGCATAATCATTTCTAATGTCATTTTCAAGAACTCT
CCCTTTTGGAATATCCACCCTGTTTATTGCAGCAATGTTGTTATTCGATATGTCACCATA
TTGGCTCCAGCTGATTCTCCAAACACTGATGGAATTGATCCAGATTCAAGCTCCCATGTC
TGCATAGAAGACTCTTATATTTCCGTAGGGGATGACCTAGTAGCCGTGAAGAGTGGGTGG
GATCAATATGGCATTGCTTATGGTCGCCCTAGTCATGGCATAACCATCCGAAGGATAACT
GGATCATCTCCATTTGCTGGAATTGCTGTTGGAAGTGAAACTTCTGGTGGCGTAGTGGAT
GTTTTAGCTGAGCATATAAACCTTTTCAACATGGGAGTTGGCATCCACATTAAGACAAAC
ATTGGTCGAGGAGGGGTTATCAGGAACATTACGGTCTCAAATGTCTACATGGAAAATACA
CGAACAGGGATTAAGATTGCAGGGGATGTTGGGGACCATCCAGATGAAAACTTCAATCCG
AATGCTCTTCCAGTGGTTAAGGGTATCAAGATTAAGGATGTTTGGGGTGAAAAGGTTTTG
CAGGCTGGTTTGATCCGTGGTTTGAAGAATTCCCCTTTCTCAGGGATTTGTCTCTCCAAT
ATCAACCTTCATGGCAACAACCCCGGACCACGAAATTCCCCTTGGAAATGCTCAGATGTT
AGCGGAGCTGCAATTCAAGTCAGCCCTTGGCCTTGCTCAGAACTCACCAGCAGCCAACAA
ACTGGTGCATGCTCTACCTACTTCTGA

Peptide Sequence

PEP ID

XP_016474156.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MNKWVGSVFLCIVSILFLMNWPVAAELETCSGIVPMQYRYDKISILDYGGVGDGRTLNTK
AFKEAIFRIQHLKRRGGSLLYVPAGVYLTGPFNLTSRMTLYLARGAVIKATQDASQWPLV
DPLPSYGRGRERPGGRYMSLLHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPH
LIELMNSRGIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHV
CIEDSYISVGDDLVAVKSGWDQYGIAYGRPSHGITIRRITGSSPFAGIAVGSETSGGVVD
VLAEHINLFNMGVGIHIKTNIGRGGVIRNITVSNVYMENTRTGIKIAGDVGDHPDENFNP
NALPVVKGIKIKDVWGEKVLQAGLIRGLKNSPFSGICLSNINLHGNNPGPRNSPWKCSDV
SGAAIQVSPWPCSELTSSQQTGACSTYF

Transcript Sequence

Gene sequence data has not been registered.